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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8417173_8417383_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8417173 - 8417383
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
CTGTCTGTGCCT
Flanking Amino Acid:
REREGRTKDQVMLLIDIELA
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
32.7
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
75.1
0.56
1
71.9
38
Minor 5ss
33
-1.9
3.5
48.2
47.9
Minor BPS
37.7
-0.8
3.7
65.81
45.8

Associated Gene:

Gene:
DNM1
Ensembl Gene ID:
ENSAPLG00000001168
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025031
8398207 - 8433518
35312
ENSAPLT00000001454
8397945 - 8435594
37650
ENSAPLT00000034023
8397945 - 8435594
37650