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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8431325_8431899_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8431325 - 8431899
Intron Length:
575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
GTCTTCCTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTAAAAT
U12 Branch Point Sequence:
TAAGAGTAAAAT
Flanking Amino Acid:
HIFALFNTEQRNVYKDYRQL
Intron Amino Acid Position:
556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.7
33.5
Major BPS
52.8
0.07
1.3
61.7
41.5
Major PPT
79.5
0.66
0.8
77
31.8
Minor 5ss
44.1
-0.6
2.8
56.9
47.3
Minor BPS
38.7
-0.7
2.4
56.2
45.4

Associated Gene:

Gene:
DNM1
Ensembl Gene ID:
ENSAPLG00000001168
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034023
8397945 - 8435594
37650
ENSAPLT00000025031
8398207 - 8433518
35312
ENSAPLT00000001454
8397945 - 8435594
37650