About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8452383_8453252_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8452383 - 8453252
Intron Length:
870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTCTC
5'SS Class:
major
3'SS Sequence:
TGGATTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
ATTTCCTTATAC
Flanking Amino Acid:
AELQNGFVKLTNENMEVTSA
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
70.6
39.7
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
76.3
0.59
1
69.7
41.4
Minor 5ss
45
-0.5
2.8
58.6
40.4
Minor BPS
68.6
0.56
1.7
78.42
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003401
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023926
8448559 - 8467338
18780
ENSAPLT00000003514
8448559 - 8467338
18780