Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8460127_8461089_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

8460127 - 8461089

Intron Length:

963

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTGGAGCTT

5'SS Class:

weak_major

3'SS Sequence:

ATGTGCCCATCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTGCAT

U12 Branch Point Sequence:

CCTCTCTGCATG

Flanking Amino Acid:

FVLIIFLVSDTRYQELAVAL

Intron Amino Acid Position:

181

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.3

0.13

1.1

55.8

42.9

Major BPS

62.4

0.31

1.4

73.6

41.8

Major PPT

0.32

60.7

40.8

Minor 5ss

31.6

-2.1

3.9

50.3

46.6

Minor BPS

-0.7

1.9

44.48

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003401

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023926

8448559 - 8467338

18780