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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8466036_8467290_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8466036 - 8467290
Intron Length:
1255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTTTTCACA
Flanking Amino Acid:
QSKLAAAKKKLKEYQQKNSP
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.4
30.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.3
0.86
0.7
84
30.3
Minor 5ss
23.1
-3.1
3.2
28
44
Minor BPS
64.8
0.46
1.7
76.76
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003401
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023926
8448559 - 8467338
18780
ENSAPLT00000003514
8448559 - 8467338
18780