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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8484367_8484641_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8484367 - 8484641
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
CATTCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
ACTTCTCTCATT
Flanking Amino Acid:
FKEMLLNFLKSNLGDQPSLA
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
64.9
42.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
82.3
0.73
0.8
73.4
36.7
Minor 5ss
31.8
-2.1
3
37.6
47.1
Minor BPS
48.9
-0
2
70.34
41.4

Associated Gene:

Gene:
DIPK1B
Ensembl Gene ID:
ENSAPLG00000004075
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044870
8483554 - 8487454
3901
ENSAPLT00000035796
8483554 - 8488333
4780
ENSAPLT00000004164
8483554 - 8489711
6158