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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8484819_8485003_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8484819 - 8485003
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTTTTCTCCCCT
Flanking Amino Acid:
RCLSSSPTQQVYSGLWKEKE
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
76.2
39.9
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
74.9
0.56
0.9
68.6
37.3
Minor 5ss
37.4
-1.4
3.3
52.4
44.8
Minor BPS
42
-0.5
3.7
79.4
43

Associated Gene:

Gene:
DIPK1B
Ensembl Gene ID:
ENSAPLG00000004075
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004164
8483554 - 8489711
6158