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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8533095_8534400_R

Intron Information:

Intron Rank:
155339
Intron Class:
major
Intron Phase:
Intron Coordinates:
8533095 - 8534400
Intron Length:
1306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGCCT
5'SS Class:
major
3'SS Sequence:
AAATTTTCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTTTTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.4
43.6
Major BPS
100
1.24
0.5
100
0
Major PPT
67.8
0.4
1
60.3
44.8
Minor 5ss
33.9
-1.8
3.4
49.8
46
Minor BPS
57
0.21
1.7
71.66
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031070
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035399
8532985 - 8536133
3149