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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8534624_8535977_R

Intron Information:

Intron Rank:
155340
Intron Class:
major
Intron Phase:
Intron Coordinates:
8534624 - 8535977
Intron Length:
1354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTA
5'SS Class:
major
3'SS Sequence:
TCTCCCTGAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TCTCCCTGAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.6
31
Major BPS
75.1
0.62
1
65.6
41
Major PPT
69.2
0.43
1
65.3
34.9
Minor 5ss
49.9
-0
2.4
67.2
43.9
Minor BPS
71.7
0.68
1.4
78.11
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031070
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043227
8534252 - 8536928
2677
ENSAPLT00000035399
8532985 - 8536133
3149