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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_85504_85965_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85504 - 85965
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTGTG
5'SS Class:
major
3'SS Sequence:
CCCTCTGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGATGAT
U12 Branch Point Sequence:
AAGGCCAGAAGA
Flanking Amino Acid:
KRQSDTRNSTEPGQPHSPLG
Intron Amino Acid Position:
1144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.3
68.8
42.3
Major BPS
60.7
0.27
1.2
51.5
43.9
Major PPT
74.4
0.55
0.9
68.2
32
Minor 5ss
37.8
-1.4
3.1
49.2
47.1
Minor BPS
42
-0.6
2
48.86
41.3

Associated Gene:

Gene:
ABCA2
Ensembl Gene ID:
ENSAPLG00000002548
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036122
70053 - 112105
42053
ENSAPLT00000025674
72667 - 112105
39439
ENSAPLT00000017929
72667 - 112105
39439
ENSAPLT00000002789
72667 - 112105
39439