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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_86149_86438_R

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
86149 - 86438
Intron Length:
290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
TGCCACCGGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
CTCTCCTTATGC
Flanking Amino Acid:
IWDLILKYKPGRTILLSTHH
Intron Amino Acid Position:
1083

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
64.9
42.8
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
55.3
0.12
1.1
50.1
39
Minor 5ss
31.8
-2.1
3
37.6
47.1
Minor BPS
55.3
0.15
2
65.52
46.3

Associated Gene:

Gene:
ABCA2
Ensembl Gene ID:
ENSAPLG00000002548
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025674
72667 - 112105
39439
ENSAPLT00000017929
72667 - 112105
39439
ENSAPLT00000002789
72667 - 112105
39439
ENSAPLT00000036122
70053 - 112105
42053