About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8618208_8618950_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8618208 - 8618950
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TGCCCCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTAAC
U12 Branch Point Sequence:
CACGAGGTAACG
Flanking Amino Acid:
YECTCEPGYTGRMCNINIDE
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.4
30.8
Major BPS
50.5
0.01
1.3
53.1
40.5
Major PPT
73.5
0.53
0.8
64.7
36.4
Minor 5ss
23.1
-3.1
3.2
28
44
Minor BPS
34.6
-1.3
2.5
36.46
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004580
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004882
8614497 - 8631877
17381