Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8624610_8625303_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8624610 - 8625303

Intron Length:

694

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TTCTCCTGCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTCAT

U12 Branch Point Sequence:

GCCTAATTCATT

Flanking Amino Acid:

FDCQKYEGQCNPLYDQYCKD

Intron Amino Acid Position:

1228

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

77.6

32.3

Major BPS

83.4

0.83

0.8

83.7

25.7

Major PPT

75.5

0.57

0.9

68.8

37.1

Minor 5ss

35.7

-1.6

3.2

45.3

36.6

Minor BPS

43.7

-0.4

2.1

58.4

44.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004580

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004882

8614497 - 8631877

17381