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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8627485_8627825_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8627485 - 8627825
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTCAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ATGGTTTTATTT
Flanking Amino Acid:
EPLGEDSVGLKPLKNASDGT
Intron Amino Acid Position:
1493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.8
85.9
23.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
80.2
0.68
1
79.3
38.2
Minor 5ss
33.7
-1.9
2.8
42.6
38.4
Minor BPS
49.4
0.04
1.6
64.75
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004580
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004882
8614497 - 8631877
17381