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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8627917_8628189_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8627917 - 8628189
Intron Length:
273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCTCC
5'SS Class:
major
3'SS Sequence:
TGTCCTCCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TGGTGCTCATCC
Flanking Amino Acid:
EETLDTKKFRFEEQAMLPDS
Intron Amino Acid Position:
1524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.7
40.1
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
76.5
0.6
0.8
73.7
31.3
Minor 5ss
44.7
-0.6
2.8
52.1
44.7
Minor BPS
46.1
-0.3
2.2
59.28
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004580
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004882
8614497 - 8631877
17381