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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_863244_879943_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
863244 - 879943
Intron Length:
16700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAACCTT
5'SS Class:
major
3'SS Sequence:
TCATTCCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTTCTCATTC
Flanking Amino Acid:
KCTSIPYAEKVPDFGKVRTW
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
71.2
40.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79.9
0.67
0.8
74
30.9
Minor 5ss
37.7
-1.4
3.4
55.8
48.4
Minor BPS
52.3
0.05
1.8
65.67
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012596
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013108
858981 - 885138
26158