About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_864737_865769_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
864737 - 865769
Intron Length:
1033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCACTG
5'SS Class:
major
3'SS Sequence:
TTCCCTCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CCAGCGATAAAT
Flanking Amino Acid:
TEHFVDAHIQEIPENAADTA
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.39
1.2
57.3
47.4
Major BPS
72.7
0.56
1
75
30.1
Major PPT
75.7
0.58
0.9
72.7
32.1
Minor 5ss
39.7
-1.2
3.4
56
48.1
Minor BPS
40.5
-0.6
2.3
54.51
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012596
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018801
858981 - 885138
26158
ENSAPLT00000042491
858981 - 885138
26158
ENSAPLT00000030411
858981 - 885138
26158
ENSAPLT00000022830
858981 - 869765
10785