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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8649159_8649904_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8649159 - 8649904
Intron Length:
746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTCCA
5'SS Class:
major
3'SS Sequence:
TTTTGTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GACTGTTTATTT
Flanking Amino Acid:
QKRDAYPYGSRHDRYEDHWR
Intron Amino Acid Position:
1374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.2
65.4
40.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
90.6
0.91
0.7
89
28.1
Minor 5ss
37
-1.5
2.6
43.2
43.7
Minor BPS
46.9
-0.1
2
61.07
43.4

Associated Gene:

Gene:
SEC16A
Ensembl Gene ID:
ENSAPLG00000006353
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047872
8641417 - 8665950
24534
ENSAPLT00000034392
8641417 - 8665950
24534
ENSAPLT00000006657
8641417 - 8665950
24534