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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8650104_8650875_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8650104 - 8650875
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
ATGATCTATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CTAATATGATCT
Flanking Amino Acid:
RSSFSSRSQQSQLYRSNHDL
Intron Amino Acid Position:
1441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
76
34.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
66.3
0.37
1
63.7
42.4
Minor 5ss
50.5
0.02
2.7
68.2
36.7
Minor BPS
43.1
-0.4
1.9
59.46
43.3

Associated Gene:

Gene:
SEC16A
Ensembl Gene ID:
ENSAPLG00000006353
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047872
8641417 - 8665950
24534
ENSAPLT00000034392
8641417 - 8665950
24534
ENSAPLT00000006657
8641417 - 8665950
24534