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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8651054_8651800_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8651054 - 8651800
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGGCA
5'SS Class:
major
3'SS Sequence:
CTCCCTACTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTTATCTTATTT
Flanking Amino Acid:
TETGWSTVEQAPLRPSTPEK
Intron Amino Acid Position:
1500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
61.2
37.2
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
76.7
0.6
0.8
73.6
29.8
Minor 5ss
35.7
-1.6
3.5
47.9
47.7
Minor BPS
67
0.61
1.6
84.12
37

Associated Gene:

Gene:
SEC16A
Ensembl Gene ID:
ENSAPLG00000006353
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034392
8641417 - 8665950
24534
ENSAPLT00000006657
8641417 - 8665950
24534
ENSAPLT00000047872
8641417 - 8665950
24534