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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8652790_8653016_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8652790 - 8653016
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGTCCT
5'SS Class:
major
3'SS Sequence:
TTTCTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GCCTCATTAAAT
Flanking Amino Acid:
EMRAFPGPLAKDDTHKVDVI
Intron Amino Acid Position:
1568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
70.8
39.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
91.9
0.94
0.6
84.9
30
Minor 5ss
44.7
-0.6
2.8
60.1
38.2
Minor BPS
58.3
0.34
1.8
71.29
45

Associated Gene:

Gene:
SEC16A
Ensembl Gene ID:
ENSAPLG00000006353
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047872
8641417 - 8665950
24534
ENSAPLT00000034392
8641417 - 8665950
24534
ENSAPLT00000006657
8641417 - 8665950
24534