Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8653156_8653393_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8653156 - 8653393

Intron Length:

238

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTATGTTTC

5'SS Class:

strong_major

3'SS Sequence:

CTGCATATTATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATAAC

U12 Branch Point Sequence:

TTTTCCCTACTG

Flanking Amino Acid:

FIVLLCRQNGTVVGTDLAEL

Intron Amino Acid Position:

1615

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.71

74.9

36.3

Major BPS

61.3

0.28

30.6

Major PPT

68.6

0.42

0.9

61.8

38.4

Minor 5ss

51.5

0.05

2.3

61.4

43.6

Minor BPS

58.6

0.13

71.93

41.3

Associated Gene:

Gene:

SEC16A

Ensembl Gene ID:

ENSAPLG00000006353

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034392

8641417 - 8665950

24534

ENSAPLT00000006657

8641417 - 8665950

24534

ENSAPLT00000047872

8641417 - 8665950

24534