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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8653637_8653932_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8653637 - 8653932
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTACTAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATTTCTGTACTA
Flanking Amino Acid:
RELLLYGRKKDALESAMKHG
Intron Amino Acid Position:
1696

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
77.3
30.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
66.7
0.38
1
64
41.7
Minor 5ss
29.2
-2.4
3.2
41.3
45.2
Minor BPS
49.6
-0
2.2
68.85
38.5

Associated Gene:

Gene:
SEC16A
Ensembl Gene ID:
ENSAPLG00000006353
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034392
8641417 - 8665950
24534
ENSAPLT00000006657
8641417 - 8665950
24534
ENSAPLT00000047872
8641417 - 8665950
24534