Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8655102_8655339_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8655102 - 8655339

Intron Length:

238

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAACTCCT

5'SS Class:

major

3'SS Sequence:

TATTTTTCTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACTTAT

U12 Branch Point Sequence:

CATCACTTATTT

Flanking Amino Acid:

RTIATMGDTLASKGLLDAAH

Intron Amino Acid Position:

1795

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.9

0.56

1.2

42.9

Major BPS

71.3

0.53

61.3

Major PPT

89.5

0.89

0.7

84.5

30.1

Minor 5ss

42.5

-0.8

2.9

57.1

41.2

Minor BPS

50.1

0.08

1.8

67.69

Associated Gene:

Gene:

SEC16A

Ensembl Gene ID:

ENSAPLG00000006353

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047872

8641417 - 8665950

24534

ENSAPLT00000034392

8641417 - 8665950

24534

ENSAPLT00000006657

8641417 - 8665950

24534