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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8655747_8656093_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8655747 - 8656093
Intron Length:
347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGAGA
5'SS Class:
major
3'SS Sequence:
TTGCGTTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTATTTCACCT
Flanking Amino Acid:
TQPGCLPNFQVFKFIYACRL
Intron Amino Acid Position:
1868

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
68.1
38.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
70.3
0.46
0.9
65
36.4
Minor 5ss
25.5
-2.8
3
30.9
42.7
Minor BPS
52
0.14
1.8
76.2
40.8

Associated Gene:

Gene:
SEC16A
Ensembl Gene ID:
ENSAPLG00000006353
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006657
8641417 - 8665950
24534
ENSAPLT00000047872
8641417 - 8665950
24534
ENSAPLT00000034392
8641417 - 8665950
24534