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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8656235_8656351_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8656235 - 8656351
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATAC
5'SS Class:
major
3'SS Sequence:
CTTCTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTTACAATGACT
Flanking Amino Acid:
SPVLIGQLIQMSSQLRLFDP
Intron Amino Acid Position:
1915

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
72.1
34.3
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
86.8
0.83
0.7
80.5
31.5
Minor 5ss
43.8
-0.7
2.9
59
45.7
Minor BPS
56.3
0.28
2
82.91
37.5

Associated Gene:

Gene:
SEC16A
Ensembl Gene ID:
ENSAPLG00000006353
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047872
8641417 - 8665950
24534
ENSAPLT00000034392
8641417 - 8665950
24534
ENSAPLT00000006657
8641417 - 8665950
24534