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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8657686_8658332_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8657686 - 8658332
Intron Length:
647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGAAAT
5'SS Class:
major
3'SS Sequence:
TTTGCTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
TTTTCCCCACTA
Flanking Amino Acid:
REEEQTNLETGMQRIPPESP
Intron Amino Acid Position:
2104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.3
73.4
37.3
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
78.7
0.65
1
83.1
32.3
Minor 5ss
36.6
-1.5
2.9
49
46.8
Minor BPS
49.8
-0
2.1
72.38
39.9

Associated Gene:

Gene:
SEC16A
Ensembl Gene ID:
ENSAPLG00000006353
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006657
8641417 - 8665950
24534
ENSAPLT00000047872
8641417 - 8665950
24534
ENSAPLT00000034392
8641417 - 8665950
24534