Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8659029_8659215_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8659029 - 8659215

Intron Length:

187

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTATGCCAT

5'SS Class:

major

3'SS Sequence:

ATTTGTGATACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

TTCCCATGTATT

Flanking Amino Acid:

RSASQSSAYMGYGRRSRTTS

Intron Amino Acid Position:

2150

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

63.2

42.6

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

72.4

0.5

1.1

65.8

44.1

Minor 5ss

45.8

-0.4

2.9

61.4

44.5

Minor BPS

-0.2

67.64

42.8

Associated Gene:

Gene:

SEC16A

Ensembl Gene ID:

ENSAPLG00000006353

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047872

8641417 - 8665950

24534

ENSAPLT00000034392

8641417 - 8665950

24534