Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8660008_8660172_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8660008 - 8660172

Intron Length:

165

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCC|GTAAGTCCA

5'SS Class:

major

3'SS Sequence:

GGTTTCCCTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

GAACTGCTAATT

Flanking Amino Acid:

AHLPDDKNKSIVWDEQKQRW

Intron Amino Acid Position:

2213

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.3

0.43

1.4

62.9

43.4

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

73.4

0.53

0.9

67.1

35.4

Minor 5ss

36.4

-1.5

2.9

47.3

41.1

Minor BPS

42.1

-0.5

2.2

56.86

39.3

Associated Gene:

Gene:

SEC16A

Ensembl Gene ID:

ENSAPLG00000006353

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006657

8641417 - 8665950

24534

ENSAPLT00000047872

8641417 - 8665950

24534

ENSAPLT00000034392

8641417 - 8665950

24534