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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8660230_8660895_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8660230 - 8660895
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTCAA
U12 Branch Point Sequence:
TAGTCAATGATT
Flanking Amino Acid:
WVNLDEPEEESKPPPPPPTG
Intron Amino Acid Position:
2232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
67.8
0.44
1.1
69.6
37.5
Major PPT
73.7
0.53
1
69.6
36.7
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
49.3
0.03
1.9
70.17
40.7

Associated Gene:

Gene:
SEC16A
Ensembl Gene ID:
ENSAPLG00000006353
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047872
8641417 - 8665950
24534
ENSAPLT00000034392
8641417 - 8665950
24534
ENSAPLT00000006657
8641417 - 8665950
24534