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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_86636_86918_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86636 - 86918
Intron Length:
283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGCACC
5'SS Class:
major
3'SS Sequence:
TTACTGTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CTTCTCTTACTG
Flanking Amino Acid:
AEEEIRKEMDKMIEDLELSN
Intron Amino Acid Position:
1017

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.1
63.6
39.5
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
75.7
0.58
0.9
73.3
36.9
Minor 5ss
41
-1
3.1
52.8
38.3
Minor BPS
54
-0
1.7
59.73
42.8

Associated Gene:

Gene:
ABCA2
Ensembl Gene ID:
ENSAPLG00000002548
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036122
70053 - 112105
42053
ENSAPLT00000025674
72667 - 112105
39439
ENSAPLT00000017929
72667 - 112105
39439
ENSAPLT00000002789
72667 - 112105
39439