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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8667321_8668501_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
8667321 - 8668501
Intron Length:
1181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGGTGA
5'SS Class:
weak_major
3'SS Sequence:
CAGTCACCCCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TGAAAATTAAAT
Flanking Amino Acid:
GPAAGGGRPAPPPRKPRLER
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.9
0.21
1.3
54
41.6
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
50.7
0.02
1
46.2
35.6
Minor 5ss
32.5
-2
3.3
41.9
45.3
Minor BPS
47.9
-0
1.9
66.96
42.2

Associated Gene:

Gene:
INPP5E
Ensembl Gene ID:
ENSAPLG00000006952
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007220
8667139 - 8676105
8967