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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_866982_868354_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
866982 - 868354
Intron Length:
1373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
GTTTCCTCACCA
Flanking Amino Acid:
KFILRAECVQFERDITIWNN
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
80.7
0.69
0.7
73
31.8
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
63.3
0.41
1.9
76.68
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012596
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022830
858981 - 869765
10785