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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8672212_8672366_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8672212 - 8672366
Intron Length:
155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TTCTCTCTAACG
Flanking Amino Acid:
IRRDLIWFCSEVEYATVTTR
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
74
36.6
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
89.2
0.88
0.7
81.3
30.7
Minor 5ss
35.1
-1.7
3.2
49.2
47.1
Minor BPS
65.3
0.34
1.8
71.75
41.4

Associated Gene:

Gene:
INPP5E
Ensembl Gene ID:
ENSAPLG00000006952
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007220
8667139 - 8676105
8967