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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8673785_8674355_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8673785 - 8674355
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCCATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTCTTGTTCATG
Flanking Amino Acid:
YDQLTSEMSRGSIFKGFQEA
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
77.5
32.9
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
71.4
0.48
0.9
64.7
29.8
Minor 5ss
34.2
-1.8
2.9
42.1
45
Minor BPS
45.7
-0.4
2.4
57.74
45

Associated Gene:

Gene:
INPP5E
Ensembl Gene ID:
ENSAPLG00000006952
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007220
8667139 - 8676105
8967