Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8681658_8682038_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8681658 - 8682038

Intron Length:

381

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAAACAC

5'SS Class:

major

3'SS Sequence:

TGTTTCCTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTTAT

U12 Branch Point Sequence:

GCTGCTTCAATT

Flanking Amino Acid:

EPLLTEMIHAAAYRENTVGL

Intron Amino Acid Position:

202

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.5

1.1

59.7

39.5

Major BPS

79.9

0.74

0.9

69.7

37.1

Major PPT

83.8

0.76

0.7

Minor 5ss

32.1

-2

3.2

44.2

Minor BPS

54.5

0.22

1.7

68.3

43.3

Associated Gene:

Gene:

PMPCA

Ensembl Gene ID:

ENSAPLG00000007036

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046966

8677560 - 8683686

6127

ENSAPLT00000007331

8677560 - 8683775

6216