Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8682790_8683099_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8682790 - 8683099

Intron Length:

310

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGGGTACC

5'SS Class:

major

3'SS Sequence:

TCTTTGTTCTTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

TAATCCGTAACA

Flanking Amino Acid:

SHFLEKLAFSSTAQFGSKDE

Intron Amino Acid Position:

109

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.1

0.55

1.1

66.2

39.6

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

81.2

0.7

0.8

80.5

31.5

Minor 5ss

30.6

-2.2

2.9

39.8

Minor BPS

66.6

0.52

77.73

38.7

Associated Gene:

Gene:

PMPCA

Ensembl Gene ID:

ENSAPLG00000007036

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046966

8677560 - 8683686

6127

ENSAPLT00000007331

8677560 - 8683775

6216