Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8687427_8688627_F

Intron Information:

Intron Rank:

Intron Class:

major_hybrid

Intron Phase:

Intron Coordinates:

8687427 - 8688627

Intron Length:

1201

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCTCCTCAG

5'SS Class:

major

3'SS Sequence:

AAAATGCCTCAAG|G

3'SS Class:

major_hybrid

U2 Branch Point Sequence:

TTTTAAC

U12 Branch Point Sequence:

TTTCTTTTAACT

Flanking Amino Acid:

WRRCEEPLAQEVEKEEDSSD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.7

0.3

1.4

47.2

48.2

Major BPS

89.7

0.98

0.7

89.9

Major PPT

49.6

-0

1.1

42.9

42.5

Minor 5ss

24.1

-3

3.7

32.7

Minor BPS

81.3

1.06

92.89

28.4

Associated Gene:

Gene:

SNAPC4

Ensembl Gene ID:

ENSAPLG00000007557

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007857

8687247 - 8701565

14319