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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8689440_8689998_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8689440 - 8689998
Intron Length:
559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TAATGTTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TAATGTTTACTA
Flanking Amino Acid:
PYFKDKTTGIGPPSNEDAKE
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
78
31.1
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
66.3
0.37
1
59.7
45.5
Minor 5ss
37.6
-1.4
2.8
48.3
41.8
Minor BPS
48.6
-0.1
2
60.71
40

Associated Gene:

Gene:
SNAPC4
Ensembl Gene ID:
ENSAPLG00000007557
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007857
8687247 - 8701565
14319