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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8692416_8692735_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8692416 - 8692735
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
AGCTACAAAACA
Flanking Amino Acid:
HDWEKISNIHFDGQRSSEEL
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.7
40.8
Major BPS
60.3
0.26
1
65.5
28
Major PPT
77.7
0.62
0.7
76.7
25.4
Minor 5ss
42
-0.9
2.8
53.9
43.5
Minor BPS
45.1
-0.3
2
56.63
42

Associated Gene:

Gene:
SNAPC4
Ensembl Gene ID:
ENSAPLG00000007557
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007857
8687247 - 8701565
14319