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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8693609_8693847_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8693609 - 8693847
Intron Length:
239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGCTCT
5'SS Class:
weak_major
3'SS Sequence:
GTGATTAACATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
GTGTGATTAACA
Flanking Amino Acid:
KGPWTPEEDAMLLAAVKKYG
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
65.7
40.8
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
57.4
0.17
1
51.4
41.8
Minor 5ss
49.4
-0
2.8
75.9
39.2
Minor BPS
55.6
0.17
2.1
69.37
42.6

Associated Gene:

Gene:
SNAPC4
Ensembl Gene ID:
ENSAPLG00000007557
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007857
8687247 - 8701565
14319