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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8699239_8699328_F

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8699239 - 8699328
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGGTTCCT
5'SS Class:
weak_major
3'SS Sequence:
CGGACCACAGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CAGTAAC
U12 Branch Point Sequence:
TTCCCTGTGACC
Flanking Amino Acid:
NQAFVPRQIARPGNFLPALV
Intron Amino Acid Position:
940

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.4
0.03
1.1
49.2
41.3
Major BPS
54.4
0.11
1.2
57
36.4
Major PPT
52.5
0.06
1
45
36.2
Minor 5ss
32.3
-2
3.2
47.4
42.1
Minor BPS
50.4
-0
2
66.73
39.6

Associated Gene:

Gene:
SNAPC4
Ensembl Gene ID:
ENSAPLG00000007557
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007857
8687247 - 8701565
14319