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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8700544_8701427_F

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8700544 - 8701427
Intron Length:
884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGTCAGAG
5'SS Class:
weak_major
3'SS Sequence:
AGTGTGCACATAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TCTTGCGTTAGT
Flanking Amino Acid:
DEEEWQSENESVLLTLQGMG
Intron Amino Acid Position:
1345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.7
0.09
1.1
48.4
36.2
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
54.8
0.11
1
47.3
40.2
Minor 5ss
37.7
-1.4
3.3
46
44
Minor BPS
41.8
-0.5
2.7
67.33
49.2

Associated Gene:

Gene:
SNAPC4
Ensembl Gene ID:
ENSAPLG00000007557
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007857
8687247 - 8701565
14319