Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8706336_8706935_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8706336 - 8706935

Intron Length:

600

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTGAA

5'SS Class:

strong_major

3'SS Sequence:

GCTGGTTTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GATTAAT

U12 Branch Point Sequence:

ATTAATAGAACT

Flanking Amino Acid:

PSLVMRKRKAGVLLDILQRT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

73.7

32.5

Major BPS

0.6

1.2

75.9

36.3

Major PPT

76.8

0.6

72.6

42.4

Minor 5ss

25.2

-2.9

3.2

30.3

43.5

Minor BPS

47.1

-0.1

1.9

70.58

39.5

Associated Gene:

Gene:

CARD9

Ensembl Gene ID:

ENSAPLG00000007587

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007881

8706152 - 8712441

6290

ENSAPLT00000041846

8706152 - 8712441

6290