Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8708484_8708968_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8708484 - 8708968

Intron Length:

485

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGCTCCAA

5'SS Class:

major

3'SS Sequence:

CATGTCTCAACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAC

U12 Branch Point Sequence:

CATGTCTCAACA

Flanking Amino Acid:

NLRRELRRAEYAEEKEMLEL

Intron Amino Acid Position:

313

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.1

0.33

1.1

54.1

40.5

Major BPS

86.5

0.91

0.8

77.4

37.4

Major PPT

68.3

0.41

62.5

38.3

Minor 5ss

30.7

-2.2

3.2

38.6

46.4

Minor BPS

55.5

0.17

1.7

64.13

42.4

Associated Gene:

Gene:

CARD9

Ensembl Gene ID:

ENSAPLG00000007587

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007881

8706152 - 8712441

6290