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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8712151_8712344_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8712151 - 8712344
Intron Length:
194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGGCCT
5'SS Class:
major
3'SS Sequence:
CCCTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTTCTAAAACT
Flanking Amino Acid:
RMKDCFERYRRKRAMRRVPK
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.3
59.6
44.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82
0.72
0.8
79.3
32.7
Minor 5ss
34.9
-1.7
3.2
48.9
46.9
Minor BPS
58.3
0.34
2
80.33
41.9

Associated Gene:

Gene:
CARD9
Ensembl Gene ID:
ENSAPLG00000007587
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007881
8706152 - 8712441
6290