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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_87132_87420_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
87132 - 87420
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
ACCATCCATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CATTCCTTACCA
Flanking Amino Acid:
GHNGAGKTTTMSILTGLFPP
Intron Amino Acid Position:
946

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
79.6
29.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
65.2
0.34
1
55
39.8
Minor 5ss
39.8
-1.1
3
55.2
42.1
Minor BPS
70.6
0.64
1.6
76.39
40.8

Associated Gene:

Gene:
ABCA2
Ensembl Gene ID:
ENSAPLG00000002548
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025674
72667 - 112105
39439
ENSAPLT00000017929
72667 - 112105
39439
ENSAPLT00000002789
72667 - 112105
39439
ENSAPLT00000036122
70053 - 112105
42053