Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8738143_8740958_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8738143 - 8740958

Intron Length:

2816

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCGAA

5'SS Class:

strong_major

3'SS Sequence:

TTGCTTTCCCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAATGAC

U12 Branch Point Sequence:

TGTGCAATGACT

Flanking Amino Acid:

LDLLKFPSEKDQNGDSHHVG

Intron Amino Acid Position:

422

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

77.6

32.8

Major BPS

54.6

0.12

1.1

47.1

36.1

Major PPT

68.6

0.42

67.8

Minor 5ss

35.6

-1.6

3.3

46.2

49.1

Minor BPS

49.4

0.04

74.55

41.8

Associated Gene:

Gene:

GPSM1

Ensembl Gene ID:

ENSAPLG00000007805

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027644

8720421 - 8765459

45039

ENSAPLT00000008137

8720421 - 8781713

61293