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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8762191_8765295_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
8762191 - 8765295
Intron Length:
3105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
CGCCTCTAAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66
40.1
Major BPS
73
0.57
1
73.6
28.6
Major PPT
85.6
0.8
0.8
80.2
31.8
Minor 5ss
28.4
-2.5
3.5
37
47.6
Minor BPS
46.8
-0.1
1.8
58.62
44.3

Associated Gene:

Gene:
GPSM1
Ensembl Gene ID:
ENSAPLG00000007805
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027644
8720421 - 8765459
45039