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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8802678_8805353_F

Intron Information:

Intron Rank:
146439
Intron Class:
major
Intron Phase:
Intron Coordinates:
8802678 - 8805353
Intron Length:
2676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATAATGAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
80
0.75
1
78.6
31
Major PPT
85.8
0.81
0.8
84.1
30.9
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
45.4
-0.2
2.1
65.88
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028907
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035935
8801287 - 8817296
16010